1 HAMP#1
84-152 aa · 69 aa · 17.9% of protein
Raw token
HAMP:84:0.000000527:152:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN165_RS01780
Histidine kinase, Classic
Clostridioides difficile E1 · GCF_000582865
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000582865#BN165_RS01780Stable P2CS identifier used across views.
GenomeGCF_000582865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 386 aa (59.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
164-217 aa · 54 aa · 14.0% of protein
Raw token
HisKA:164:0.0000000445:217:54:643 HATPase_c#3
278-382 aa · 105 aa · 27.2% of protein
Raw token
HATPase_c:278:1.65e-20:382:106:109- Raw architecture: HAMP:84:0.000000527:152:70:69#HisKA:164:0.0000000445:217:54:64#HATPase_c:278:1.65e-20:382:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000582865::NZ_HF927493.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12075-13897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN165_210013RefSeq proteinWP_003417817.1
Context group ID
GCF_000582865::NZ_HF927493.1::G00003Context members
BN165_RS01775BN165_RS01780
Partner locus tags
BN165_RS01775BN165_RS01780
Partner old locus tags
BN165_210012BN165_210013
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003417817.1Primary protein accession used for annex mappings.
UniProt accessionD5Q091Primary UniProt accession resolved in the annex database.
UniProt IDD5Q091_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN165_RS01780Primary locus identifier stored in the genes table.
Old locus tagBN165_210013Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927493.1Sequence record reported by the local genomic context database.
Genomic interval12 737-13 897 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 075-13 897 ntGCF_000582865::NZ_HF927493.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000582865::NZ_HF927493.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927493.1All displayed genes belong to this local TCS context.
Neighborhood span12 075-13 897 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 075 nt13 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN165_RS01775GCF_000582865#BN165_RS01775
RROmpR
12 075-12 749 nt · Forward (+)
BN165_RS01780GCF_000582865#BN165_RS01780
HKClassicCurrent focus
12 737-13 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0202410Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2557654
Simplified PFAM architecture for HKOC_2557654
PFAM domain coverage: 219 / 386 aa (56.7%)
1 aa386 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-151] | HisKA[164-231] | HATPase_c[278-382]
- Domain count: 3
- Matched identifier: HKOC_2557654
- Positioned domains: HAMP 106-151 ; HisKA 164-231 ; HATPase_c 278-382
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0202410
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 299 total members. Page 1 / 6.
GCF_000155065#QAE_RS0202410 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 225 722 · GCF_000582865
AssemblyE1 · Scaffoldhaploid
Genome composition3 945 725 bp · 29,0% GCClostridioides difficile E1
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key