1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:5.78e-24:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J098_RS0111345
Histidine kinase, Classic
Bacillus thuringiensis serovar tolworthi NA205-3 · GCF_000571955
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000571955#J098_RS0111345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 376 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
286-367 aa · 82 aa · 21.8% of protein
Raw token
HATPase_c:286:0.000000000012:367:100:109- Raw architecture: HisKA_3:178:5.78e-24:241:64:68#HATPase_c:286:0.000000000012:367:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000571955::NZ_AYXQ01000009.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110904-112633Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000571955::NZ_AYXQ01000009.1::G00026Context members
J098_RS0111340J098_RS0111345
Partner locus tags
J098_RS0111340J098_RS0111345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000570614.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KQ70Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KQ70_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ098_RS0111345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AYXQ01000009.1Sequence record reported by the local genomic context database.
Genomic interval111 503-112 633 nt1 131 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 904-112 633 ntGCF_000571955::NZ_AYXQ01000009.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000571955::NZ_AYXQ01000009.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AYXQ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span110 904-112 633 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 904 nt112 633 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J098_RS0111340GCF_000571955#J098_RS0111340
RRNarL
110 904-111 506 nt · Reverse (-)
J098_RS0111345GCF_000571955#J098_RS0111345
HKClassicCurrent focus
111 503-112 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS26150Use this link to inspect the representative gene detail.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2641488
Simplified PFAM architecture for HKOC_2641488
PFAM domain coverage: 290 / 376 aa (77.1%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-148] | HisKA_3[178-241] | HATPase_c[284-364]
- Domain count: 3
- Matched identifier: HKOC_2641488
- Positioned domains: DesK_N 4-148 ; HisKA_3 178-241 ; HATPase_c 284-364
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS26150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 023 · GCF_000571955
AssemblyNa205-2 Genome assembly · Contighaploid
Genome composition6 510 053 bp · 34,5% GCBacillus thuringiensis serovar tolworthi NA205-3
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key