1 Response_reg#1
8-109 aa · 102 aa · 38.8% of protein
Raw token
Response_reg:8:6.73e-20:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B689B_RS09695
Response regulator LytTR family
Bifidobacterium breve 689b · GCF_000569055
ClassRRTypeLytTRLength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000569055#B689B_RS09695Stable P2CS identifier used across views.
GenomeGCF_000569055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 263 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-226 aa · 88 aa · 33.5% of protein
Raw token
LytTR:139:2.88e-20:226:93:98- Raw architecture: Response_reg:8:6.73e-20:109:107:111#LytTR:139:2.88e-20:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000569055::NZ_CP006715.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2291866-2292657Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB689b_1916RefSeq proteinWP_025332541.1
Context group ID
GCF_000569055::NZ_CP006715.1::G00016Context members
B689B_RS09695
Partner locus tags
B689B_RS09695
Partner old locus tags
B689b_1916
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025332541.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB689B_RS09695Primary locus identifier stored in the genes table.
Old locus tagB689b_1916Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006715.1Sequence record reported by the local genomic context database.
Genomic interval2 291 866-2 292 657 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 291 866-2 292 657 ntGCF_000569055::NZ_CP006715.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000569055::NZ_CP006715.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006715.1All displayed genes belong to this local TCS context.
Neighborhood span2 291 866-2 292 657 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 291 866 nt2 292 657 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B689B_RS09695GCF_000569055#B689B_RS09695
RRLytTRCurrent focus
2 291 866-2 292 657 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569055#B689B_RS09695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639714
Simplified PFAM architecture for RROC_0639714
PFAM domain coverage: 193 / 263 aa (73.4%)
1 aa263 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0639714
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000569055#B689B_RS09695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 942 · GCF_000569055
AssemblyASM56905v1 · Complete Genomehaploid
Genome composition2 331 707 bp · 58,5% GCBifidobacterium breve 689b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key