1 Response_reg#1
4-102 aa · 99 aa · 38.7% of protein
Raw token
Response_reg:4:0.0000000000000197:102:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B689B_RS05870
Response regulator, FrzZ family
Bifidobacterium breve 689b · GCF_000569055
ClassRRTypeFrzZLength256 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000569055#B689B_RS05870Stable P2CS identifier used across views.
GenomeGCF_000569055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length256 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 256 aa (83.6%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa256 aa
Domain-by-domain annotation2 items
2 Response_reg#2
137-251 aa · 115 aa · 44.9% of protein
Raw token
Response_reg:137:0.00000000358:251:115:111- Raw architecture: Response_reg:4:0.0000000000000197:102:99:111#Response_reg:137:0.00000000358:251:115:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000569055::NZ_CP006715.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1357856-1358626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB689b_1160RefSeq proteinWP_016317328.1
Context group ID
GCF_000569055::NZ_CP006715.1::G00010Context members
B689B_RS05870
Partner locus tags
B689B_RS05870
Partner old locus tags
B689b_1160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016317328.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB689B_RS05870Primary locus identifier stored in the genes table.
Old locus tagB689b_1160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006715.1Sequence record reported by the local genomic context database.
Genomic interval1 357 856-1 358 626 nt771 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 357 856-1 358 626 ntGCF_000569055::NZ_CP006715.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000569055::NZ_CP006715.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006715.1All displayed genes belong to this local TCS context.
Neighborhood span1 357 856-1 358 626 nt771 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 357 856 nt1 358 626 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B689B_RS05870GCF_000569055#B689B_RS05870
RRFrzZCurrent focus
1 357 856-1 358 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS20270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0673414
Simplified PFAM architecture for RROC_0673414
PFAM domain coverage: 214 / 256 aa (83.6%)
1 aa256 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[4-102] | Response_reg[137-251]
- Domain count: 2
- Matched identifier: RROC_0673414
- Positioned domains: Response_reg 4-102 ; Response_reg 4-102 ; Response_reg 137-251 ; Response_reg 137-251
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS20270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 942 · GCF_000569055
AssemblyASM56905v1 · Complete Genomehaploid
Genome composition2 331 707 bp · 58,5% GCBifidobacterium breve 689b
Signal transduction countsGenes 26 · HK 10 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key