1 HisKA#1
180-244 aa · 65 aa · 15.1% of protein
Raw token
HisKA:180:0.0000000000145:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2258_RS08545
Histidine kinase, Classic
Bifidobacterium breve NCFB 2258 · GCF_000569035
ClassHKTypeClassicLength431 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000569035#B2258_RS08545Stable P2CS identifier used across views.
GenomeGCF_000569035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length431 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 431 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa431 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.2% of protein
Raw token
HATPase_c:308:5.42e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000145:244:65:64#HATPase_c:308:5.42e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000569035::NZ_CP006714.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1998133-2000251Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB2258_1702RefSeq proteinWP_025263263.1
Context group ID
GCF_000569035::NZ_CP006714.1::G00017Context members
B2258_RS08540B2258_RS08545
Partner locus tags
B2258_RS08540B2258_RS08545
Partner old locus tags
B2258_1701B2258_1702
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025263263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2258_RS08545Primary locus identifier stored in the genes table.
Old locus tagB2258_1702Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006714.1Sequence record reported by the local genomic context database.
Genomic interval1 998 956-2 000 251 nt1 296 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 998 133-2 000 251 ntGCF_000569035::NZ_CP006714.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000569035::NZ_CP006714.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006714.1All displayed genes belong to this local TCS context.
Neighborhood span1 998 133-2 000 251 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 998 133 nt2 000 251 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2258_RS08540GCF_000569035#B2258_RS08540
RROmpR
1 998 133-1 998 837 nt · Reverse (-)
B2258_RS08545GCF_000569035#B2258_RS08545
HKClassicCurrent focus
1 998 956-2 000 251 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569035#B2258_RS08545The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2161921
Simplified PFAM architecture for HKOC_2161921
PFAM domain coverage: 176 / 431 aa (40.8%)
1 aa431 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2161921
- Positioned domains: HisKA 180-244 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_000569035#B2258_RS08545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 941 · GCF_000569035
AssemblyASM56903v1 · Complete Genomehaploid
Genome composition2 315 904 bp · 58,5% GCBifidobacterium breve NCFB 2258
Signal transduction countsGenes 31 · HK 11 · RR 17CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key