1 Response_reg#1
4-109 aa · 106 aa · 97.2% of protein
Raw token
Response_reg:4:5.59e-19:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2L_RS10880
Response regulator, CheY family
Bifidobacterium breve 2L · GCF_000568895
ClassRRTypeCheYLength109 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000568895#B2L_RS10880Stable P2CS identifier used across views.
GenomeGCF_000568895Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length109 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage106 / 109 aa (97.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa109 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.59e-19:109:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000568895::NZ_AWUG01000006.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58353-59965Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000568895::NZ_AWUG01000006.1::G00011Context members
B2L_RS00975B2L_RS10880
Partner locus tags
B2L_RS00975B2L_RS10880
Partner old locus tags
B2L_1658
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238373462.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2L_RS10880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AWUG01000006.1Sequence record reported by the local genomic context database.
Genomic interval59 636-59 965 nt330 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 353-59 965 ntGCF_000568895::NZ_AWUG01000006.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000568895::NZ_AWUG01000006.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWUG01000006.1All displayed genes belong to this local TCS context.
Neighborhood span58 353-59 965 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 353 nt59 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2L_RS00975GCF_000568895#B2L_RS00975
HKClassic
58 353-59 639 nt · Forward (+)
B2L_RS10880GCF_000568895#B2L_RS10880
RRCheYCurrent focus
59 636-59 965 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000568895#B2L_RS10880The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2469269
Simplified PFAM architecture for RROC_2469269
PFAM domain coverage: 104 / 109 aa (95.4%)
1 aa109 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-107]
- Domain count: 1
- Matched identifier: RROC_2469269
- Positioned domains: Response_reg 4-107 ; Response_reg 4-107
Cluster members and taxonomy
Representative gene: GCF_000568895#B2L_RS10880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 943 · GCF_000568895
AssemblyMira de-novo assembly · Contighaploid
Genome composition2 240 722 bp · 59,0% GCBifidobacterium breve 2L
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key