1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:8.63e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U368_RS03145
Response regulator OmpR family
Bacillus anthracis 8903-G · GCF_000558965
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000558965#U368_RS03145Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:1.06e-28:220:77:77- Raw architecture: Response_reg:4:8.63e-33:112:110:111#Trans_reg_C:145:1.06e-28:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000558965::NZ_CM002401.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span579168-581086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU368_03165RefSeq proteinWP_001238610.1
Context group ID
GCF_000558965::NZ_CM002401.1::G00003Context members
U368_RS03145U368_RS03150
Partner locus tags
U368_RS03145U368_RS03150
Partner old locus tags
U368_03165U368_03170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001238610.1Primary protein accession used for annex mappings.
UniProt accessionA0A242VZZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A242VZZ2_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU368_RS03145Primary locus identifier stored in the genes table.
Old locus tagU368_03165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM002401.1Sequence record reported by the local genomic context database.
Genomic interval579 168-579 839 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span579 168-581 086 ntGCF_000558965::NZ_CM002401.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000558965::NZ_CM002401.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM002401.1All displayed genes belong to this local TCS context.
Neighborhood span579 168-581 086 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
579 168 nt581 086 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U368_RS03145GCF_000558965#U368_RS03145
RROmpRCurrent focus
579 168-579 839 nt · Forward (+)
U368_RS03150GCF_000558965#U368_RS03150
HKClassic
579 836-581 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS03055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586823
Simplified PFAM architecture for RROC_1586823
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1586823
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS03055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 412 843 · GCF_000558965
AssemblyBa8903G_1.0 · Chromosomehaploid
Genome composition5 504 767 bp · 35,0% GCBacillus anthracis 8903-G
Signal transduction countsGenes 96 · HK 47 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key