1 HisKA#1
209-274 aa · 66 aa · 15.4% of protein
Raw token
HisKA:209:0.00000000000000272:274:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN191_RS02660
Histidine kinase, Classic
Clostridioides difficile T61 · GCF_000531715
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000531715#BN191_RS02660Stable P2CS identifier used across views.
GenomeGCF_000531715Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 429 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
319-429 aa · 111 aa · 25.9% of protein
Raw token
HATPase_c:319:6.35e-22:429:111:109- Raw architecture: HisKA:209:0.00000000000000272:274:66:64#HATPase_c:319:6.35e-22:429:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000531715::NZ_HF930089.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35612-37626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN191_160032RefSeq proteinWP_200799877.1
Context group ID
GCF_000531715::NZ_HF930089.1::G00006Context members
BN191_RS02660BN191_RS02665
Partner locus tags
BN191_RS02660BN191_RS02665
Partner old locus tags
BN191_160032BN191_160033
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_200799877.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN191_RS02660Primary locus identifier stored in the genes table.
Old locus tagBN191_160032Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF930089.1Sequence record reported by the local genomic context database.
Genomic interval35 612-36 901 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 612-37 626 ntGCF_000531715::NZ_HF930089.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531715::NZ_HF930089.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF930089.1All displayed genes belong to this local TCS context.
Neighborhood span35 612-37 626 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 612 nt37 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN191_RS02660GCF_000531715#BN191_RS02660
HKClassicCurrent focus
35 612-36 901 nt · Reverse (-)
BN191_RS02665GCF_000531715#BN191_RS02665
RROmpR
36 967-37 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531385#BN169_RS02870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2180665
Simplified PFAM architecture for HKOC_2180665
PFAM domain coverage: 177 / 429 aa (41.3%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-274] | HATPase_c[319-429]
- Domain count: 2
- Matched identifier: HKOC_2180665
- Positioned domains: HisKA 209-274 ; HATPase_c 319-429
Cluster members and taxonomy
Representative gene: GCF_000531385#BN169_RS02870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 086 · GCF_000531715
AssemblyT61 · Scaffoldhaploid
Genome composition4 071 443 bp · 28,5% GCClostridioides difficile T61
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key