1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000574:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN168_RS16720
Histidine kinase, Classic
Clostridioides difficile CD002 · GCF_000531625
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000531625#BN168_RS16720Stable P2CS identifier used across views.
GenomeGCF_000531625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 671 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-668 aa · 104 aa · 15.5% of protein
Raw token
HATPase_c:565:3.68e-30:668:104:109- Raw architecture: HisKA:449:0.00000000574:514:66:64#HATPase_c:565:3.68e-30:668:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000531625::NZ_HF929285.1::G00051
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span102249-107973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN168_650102RefSeq proteinWP_022617553.1
Context group ID
GCF_000531625::NZ_HF929285.1::G00051Context members
BN168_RS16705BN168_RS16710BN168_RS16715BN168_RS16720BN168_RS16725
Partner locus tags
BN168_RS16705BN168_RS16710BN168_RS16715BN168_RS16720BN168_RS16725
Partner old locus tags
BN168_650099BN168_650100BN168_650101BN168_650102BN168_650103
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022617553.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN168_RS16720Primary locus identifier stored in the genes table.
Old locus tagBN168_650102Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF929285.1Sequence record reported by the local genomic context database.
Genomic interval105 209-107 224 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 249-107 973 ntGCF_000531625::NZ_HF929285.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531625::NZ_HF929285.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF929285.1All displayed genes belong to this local TCS context.
Neighborhood span102 249-107 973 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 249 nt107 973 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
BN168_RS16705GCF_000531625#BN168_RS16705
HKClassic
102 249-103 364 nt · Reverse (-)
BN168_RS16710GCF_000531625#BN168_RS16710
RROmpR
103 400-104 098 nt · Reverse (-)
BN168_RS16715GCF_000531625#BN168_RS16715
RROmpR
104 479-105 159 nt · Reverse (-)
BN168_RS16720GCF_000531625#BN168_RS16720
HKClassicCurrent focus
105 209-107 224 nt · Reverse (-)
BN168_RS16725GCF_000531625#BN168_RS16725
RROmpR
107 296-107 973 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531625#BN168_RS16720The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842640
Simplified PFAM architecture for HKOC_0842640
PFAM domain coverage: 170 / 671 aa (25.3%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-667]
- Domain count: 2
- Matched identifier: HKOC_0842640
- Positioned domains: HisKA 450-514 ; HATPase_c 563-667
Cluster members and taxonomy
Representative gene: GCF_000531625#BN168_RS16720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 063 · GCF_000531625
AssemblyCD002 · Scaffoldhaploid
Genome composition4 055 939 bp · 28,5% GCClostridioides difficile CD002
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key