1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.71e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN168_RS11700
Response regulator OmpR family
Clostridioides difficile CD002 · GCF_000531625
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000531625#BN168_RS11700Stable P2CS identifier used across views.
GenomeGCF_000531625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:2.7e-21:223:78:77- Raw architecture: Response_reg:5:1.71e-19:114:111:111#Trans_reg_C:147:2.7e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000531625::NZ_HF929272.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45223-45903Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN168_520054RefSeq proteinWP_003428971.1
Context group ID
GCF_000531625::NZ_HF929272.1::G00036Context members
BN168_RS11700
Partner locus tags
BN168_RS11700
Partner old locus tags
BN168_520054
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003428971.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YL14Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YL14_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN168_RS11700Primary locus identifier stored in the genes table.
Old locus tagBN168_520054Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF929272.1Sequence record reported by the local genomic context database.
Genomic interval45 223-45 903 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 223-45 903 ntGCF_000531625::NZ_HF929272.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531625::NZ_HF929272.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF929272.1All displayed genes belong to this local TCS context.
Neighborhood span45 223-45 903 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 223 nt45 903 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN168_RS11700GCF_000531625#BN168_RS11700
RROmpRCurrent focus
45 223-45 903 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS10530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408928
Simplified PFAM architecture for RROC_1408928
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1408928
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS10530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 063 · GCF_000531625
AssemblyCD002 · Scaffoldhaploid
Genome composition4 055 939 bp · 28,5% GCClostridioides difficile CD002
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key