1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:2.01e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN169_RS06365
Response regulator OmpR family
Clostridioides difficile E16 · GCF_000531385
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000531385#BN169_RS06365Stable P2CS identifier used across views.
GenomeGCF_000531385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:160:8.54e-26:230:74:77- Raw architecture: Response_reg:5:2.01e-28:114:111:111#Trans_reg_C:160:8.54e-26:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000531385::NZ_HF927742.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75301-77494Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN169_580065RefSeq proteinWP_003437036.1
Context group ID
GCF_000531385::NZ_HF927742.1::G00019Context members
BN169_RS06365BN169_RS06370
Partner locus tags
BN169_RS06365BN169_RS06370
Partner old locus tags
BN169_580065BN169_580066
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003437036.1Primary protein accession used for annex mappings.
UniProt accessionQ18AL4Primary UniProt accession resolved in the annex database.
UniProt IDQ18AL4_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN169_RS06365Primary locus identifier stored in the genes table.
Old locus tagBN169_580065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927742.1Sequence record reported by the local genomic context database.
Genomic interval75 301-76 005 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 301-77 494 ntGCF_000531385::NZ_HF927742.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531385::NZ_HF927742.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927742.1All displayed genes belong to this local TCS context.
Neighborhood span75 301-77 494 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 301 nt77 494 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN169_RS06365GCF_000531385#BN169_RS06365
RROmpRCurrent focus
75 301-76 005 nt · Forward (+)
BN169_RS06370GCF_000531385#BN169_RS06370
HKClassic
76 007-77 494 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS05665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047081
Simplified PFAM architecture for RROC_1047081
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1047081
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 159-230 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS05665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 065 · GCF_000531385
AssemblyE16 · Scaffoldhaploid
Genome composition4 252 783 bp · 28,5% GCClostridioides difficile E16
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key