1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:7.79e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN173_RS04865
Response regulator OmpR family
Clostridioides difficile T11 · GCF_000531255
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000531255#BN173_RS04865Stable P2CS identifier used across views.
GenomeGCF_000531255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 227 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.42e-29:223:76:77- Raw architecture: Response_reg:4:7.79e-32:113:111:111#Trans_reg_C:148:1.42e-29:223:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000531255::NZ_HF926628.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13127-15062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN173_1190011RefSeq proteinWP_003418728.1
Context group ID
GCF_000531255::NZ_HF926628.1::G00015Context members
BN173_RS04865BN173_RS04870
Partner locus tags
BN173_RS04865BN173_RS04870
Partner old locus tags
BN173_1190011BN173_1190012
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003418728.1Primary protein accession used for annex mappings.
UniProt accessionD5Q1G2Primary UniProt accession resolved in the annex database.
UniProt IDD5Q1G2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN173_RS04865Primary locus identifier stored in the genes table.
Old locus tagBN173_1190011Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF926628.1Sequence record reported by the local genomic context database.
Genomic interval13 127-13 810 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 127-15 062 ntGCF_000531255::NZ_HF926628.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531255::NZ_HF926628.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF926628.1All displayed genes belong to this local TCS context.
Neighborhood span13 127-15 062 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 127 nt15 062 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN173_RS04865GCF_000531255#BN173_RS04865
RROmpRCurrent focus
13 127-13 810 nt · Forward (+)
BN173_RS04870GCF_000531255#BN173_RS04870
HKClassic
13 821-15 062 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0204850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1353984
Simplified PFAM architecture for RROC_1353984
PFAM domain coverage: 185 / 227 aa (81.5%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1353984
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0204850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 068 · GCF_000531255
AssemblyT11 · Scaffoldhaploid
Genome composition4 185 626 bp · 28,5% GCClostridioides difficile T11
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key