1 HisKA#1
31-94 aa · 64 aa · 25.6% of protein
Raw token
HisKA:31:0.00000000000216:94:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN184_RS01915
Histidine kinase, Classic
Clostridioides difficile T3 · GCF_000531225
ClassHKTypeClassicLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000531225#BN184_RS01915Stable P2CS identifier used across views.
GenomeGCF_000531225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 250 aa (67.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
141-245 aa · 105 aa · 42.0% of protein
Raw token
HATPase_c:141:2.09e-28:245:105:109- Raw architecture: HisKA:31:0.00000000000216:94:64:64#HATPase_c:141:2.09e-28:245:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000531225::NZ_HF926256.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7937-9540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN184_220011RefSeq proteinWP_234702460.1
Context group ID
GCF_000531225::NZ_HF926256.1::G00005Context members
BN184_RS01915BN184_RS01920
Partner locus tags
BN184_RS01915BN184_RS01920
Partner old locus tags
BN184_220011BN184_220012
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234702460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN184_RS01915Primary locus identifier stored in the genes table.
Old locus tagBN184_220011Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF926256.1Sequence record reported by the local genomic context database.
Genomic interval7 937-8 689 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 937-9 540 ntGCF_000531225::NZ_HF926256.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531225::NZ_HF926256.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF926256.1All displayed genes belong to this local TCS context.
Neighborhood span7 937-9 540 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 937 nt9 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN184_RS01915GCF_000531225#BN184_RS01915
HKClassicCurrent focus
7 937-8 689 nt · Reverse (-)
BN184_RS01920GCF_000531225#BN184_RS01920
RROmpR
8 848-9 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS11775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2885055
Simplified PFAM architecture for HKOC_2885055
PFAM domain coverage: 169 / 302 aa (56.0%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[83-146] | HATPase_c[193-297]
- Domain count: 2
- Matched identifier: HKOC_2885055
- Positioned domains: HisKA 83-146 ; HATPase_c 193-297
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS11775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 079 · GCF_000531225
AssemblyT3 · Scaffoldhaploid
Genome composition4 060 583 bp · 28,5% GCClostridioides difficile T3
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key