1 Response_reg#1
9-78 aa · 70 aa · 73.7% of protein
Raw token
Response_reg:9:2.71e-17:78:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN170_RS16490
Response regulator, CheY family
Clostridioides difficile T22 · GCF_000530835
ClassRRTypeCheYLength95 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000530835#BN170_RS16490Stable P2CS identifier used across views.
GenomeGCF_000530835Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length95 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage70 / 95 aa (73.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa95 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:9:2.71e-17:78:70:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000530835::NZ_HF924690.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15-302Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN170_2520001RefSeq proteinWP_022618619.1
Context group ID
GCF_000530835::NZ_HF924690.1::G00055Context members
BN170_RS16490
Partner locus tags
BN170_RS16490
Partner old locus tags
BN170_2520001
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022618619.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN170_RS16490Primary locus identifier stored in the genes table.
Old locus tagBN170_2520001Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF924690.1Sequence record reported by the local genomic context database.
Genomic interval15-302 nt288 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15-302 ntGCF_000530835::NZ_HF924690.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000530835::NZ_HF924690.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF924690.1All displayed genes belong to this local TCS context.
Neighborhood span15-302 nt288 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 nt302 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN170_RS16490GCF_000530835#BN170_RS16490
RRCheYCurrent focus
15-302 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000530835#BN170_RS16490The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472878
Simplified PFAM architecture for RROC_2472878
PFAM domain coverage: 82 / 95 aa (86.3%)
1 aa95 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[9-90]
- Domain count: 1
- Matched identifier: RROC_2472878
- Positioned domains: Response_reg 9-90 ; Response_reg 9-90
Cluster members and taxonomy
Representative gene: GCF_000530835#BN170_RS16490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 064 · GCF_000530835
AssemblyT22 · Scaffoldhaploid
Genome composition4 083 325 bp · 28,5% GCClostridioides difficile T22
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key