1 Response_reg#1
5-114 aa · 110 aa · 53.4% of protein
Raw token
Response_reg:5:2.54e-18:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN188_RS10215
Response regulator OmpR family
Clostridioides difficile T19 · GCF_000530695
ClassRRTypeOmpRLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000530695#BN188_RS10215Stable P2CS identifier used across views.
GenomeGCF_000530695Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 206 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-206 aa · 60 aa · 29.1% of protein
Raw token
Trans_reg_C:147:0.0000000000000116:206:61:77- Raw architecture: Response_reg:5:2.54e-18:114:111:111#Trans_reg_C:147:0.0000000000000116:206:61:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000530695::NZ_HF924040.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-620Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000530695::NZ_HF924040.1::G00035Context members
BN188_RS10215
Partner locus tags
BN188_RS10215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044289204.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN188_RS10215Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_HF924040.1Sequence record reported by the local genomic context database.
Genomic interval1-620 nt620 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-620 ntGCF_000530695::NZ_HF924040.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000530695::NZ_HF924040.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF924040.1All displayed genes belong to this local TCS context.
Neighborhood span1-620 nt620 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt620 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN188_RS10215GCF_000530695#BN188_RS10215
RROmpRCurrent focus
1-620 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015351875#ITJ15_RS18585Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612969
Simplified PFAM architecture for RROC_0612969
PFAM domain coverage: 185 / 271 aa (68.3%)
1 aa271 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[50-158] | Trans_reg_C[193-268]
- Domain count: 2
- Matched identifier: RROC_0612969
- Positioned domains: Response_reg 50-158 ; Trans_reg_C 193-268
Cluster members and taxonomy
Representative gene: GCF_015351875#ITJ15_RS18585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 083 · GCF_000530695
AssemblyT19 · Scaffoldhaploid
Genome composition3 956 202 bp · 28,5% GCClostridioides difficile T19
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key