1 HisKA#1
128-193 aa · 66 aa · 19.0% of protein
Raw token
HisKA:128:0.000000000000767:193:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN179_RS19710
Histidine kinase, Classic
Clostridioides difficile T6 · GCF_000530415
ClassHKTypeClassicLength348 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000530415#BN179_RS19710Stable P2CS identifier used across views.
GenomeGCF_000530415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length348 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 348 aa (50.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa348 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
239-346 aa · 108 aa · 31.0% of protein
Raw token
HATPase_c:239:3.03e-17:346:109:109- Raw architecture: HisKA:128:0.000000000000767:193:66:64#HATPase_c:239:3.03e-17:346:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000530415::NZ_HF923020.1::G00058
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span7996-9042Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN179_3520008RefSeq proteinWP_022620841.1
Context group ID
GCF_000530415::NZ_HF923020.1::G00058Context members
BN179_RS19710
Partner locus tags
BN179_RS19710
Partner old locus tags
BN179_3520008
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022620841.1Primary protein accession used for annex mappings.
UniProt accessionA0A2U1E5G1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2U1E5G1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN179_RS19710Primary locus identifier stored in the genes table.
Old locus tagBN179_3520008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF923020.1Sequence record reported by the local genomic context database.
Genomic interval7 996-9 042 nt1 047 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 996-9 042 ntGCF_000530415::NZ_HF923020.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000530415::NZ_HF923020.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF923020.1All displayed genes belong to this local TCS context.
Neighborhood span7 996-9 042 nt1 047 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 996 nt9 042 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN179_RS19710GCF_000530415#BN179_RS19710
HKClassicCurrent focus
7 996-9 042 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000321025#PTSHG_RS02050Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2806310
Simplified PFAM architecture for HKOC_2806310
PFAM domain coverage: 167 / 348 aa (48.0%)
1 aa348 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[128-193] | HATPase_c[239-339]
- Domain count: 2
- Matched identifier: HKOC_2806310
- Positioned domains: HisKA 128-193 ; HATPase_c 239-339
Cluster members and taxonomy
Representative gene: GCF_000321025#PTSHG_RS02050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 074 · GCF_000530415
AssemblyT6 · Scaffoldhaploid
Genome composition4 307 936 bp · 28,5% GCClostridioides difficile T6
Signal transduction countsGenes 101 · HK 47 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key