1 HisKA#1
241-305 aa · 65 aa · 14.1% of protein
Raw token
HisKA:241:0.00000000000169:305:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN178_RS08940
Histidine kinase, Classic
Clostridioides difficile T42 · GCF_000530325
ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000530325#BN178_RS08940Stable P2CS identifier used across views.
GenomeGCF_000530325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length462 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 462 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa462 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-460 aa · 109 aa · 23.6% of protein
Raw token
HATPase_c:352:2.39e-21:460:109:109- Raw architecture: HisKA:241:0.00000000000169:305:65:64#HATPase_c:352:2.39e-21:460:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000530325::NZ_HF933931.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44167-45555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN178_610041RefSeq proteinWP_021364432.1
Context group ID
GCF_000530325::NZ_HF933931.1::G00024Context members
BN178_RS08940
Partner locus tags
BN178_RS08940
Partner old locus tags
BN178_610041
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021364432.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8RFX3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8RFX3_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN178_RS08940Primary locus identifier stored in the genes table.
Old locus tagBN178_610041Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF933931.1Sequence record reported by the local genomic context database.
Genomic interval44 167-45 555 nt1 389 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 167-45 555 ntGCF_000530325::NZ_HF933931.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000530325::NZ_HF933931.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF933931.1All displayed genes belong to this local TCS context.
Neighborhood span44 167-45 555 nt1 389 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 167 nt45 555 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BN178_RS08940GCF_000530325#BN178_RS08940
HKClassicCurrent focus
44 167-45 555 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS07345Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1808034
Simplified PFAM architecture for HKOC_1808034
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-305] | HATPase_c[352-460]
- Domain count: 2
- Matched identifier: HKOC_1808034
- Positioned domains: HisKA 241-305 ; HATPase_c 352-460
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS07345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 073 · GCF_000530325
AssemblyT42 · Scaffoldhaploid
Genome composition4 127 827 bp · 28,5% GCClostridioides difficile T42
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key