1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:5.63e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A16_RS01535
Response regulator OmpR family
Bacillus anthracis str. A16 · GCF_000512835
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000512835#A16_RS01535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:3.15e-37:229:77:77- Raw architecture: Response_reg:6:5.63e-37:115:111:111#Trans_reg_C:153:3.15e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000512835::NZ_CP001970.2::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span264312-266502Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA16_03020RefSeq proteinWP_000929883.1
Context group ID
GCF_000512835::NZ_CP001970.2::G00001Context members
A16_RS01535A16_RS01540
Partner locus tags
A16_RS01535A16_RS01540
Partner old locus tags
A16_03020A16_03030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000929883.1Primary protein accession used for annex mappings.
UniProt accessionA0A242WCU0Primary UniProt accession resolved in the annex database.
UniProt IDA0A242WCU0_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA16_RS01535Primary locus identifier stored in the genes table.
Old locus tagA16_03020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP001970.2Sequence record reported by the local genomic context database.
Genomic interval264 312-265 013 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span264 312-266 502 ntGCF_000512835::NZ_CP001970.2::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000512835::NZ_CP001970.2::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP001970.2All displayed genes belong to this local TCS context.
Neighborhood span264 312-266 502 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
264 312 nt266 502 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A16_RS01535GCF_000512835#A16_RS01535
RROmpRCurrent focus
264 312-265 013 nt · Forward (+)
A16_RS01540GCF_000512835#A16_RS01540
HKClassic
264 997-266 502 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS01480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080361
Simplified PFAM architecture for RROC_1080361
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080361
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS01480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 743 835 · GCF_000512835
AssemblyASM51283v2 · Complete Genomehaploid
Genome composition5 505 446 bp · 35,0% GCBacillus anthracis str. A16
Signal transduction countsGenes 95 · HK 47 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key