1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:1.88e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN164_RS06555
Response regulator OmpR family
Clostridioides difficile T20 · GCF_000499505
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000499505#BN164_RS06555Stable P2CS identifier used across views.
GenomeGCF_000499505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:4.94e-30:225:78:77- Raw architecture: Response_reg:5:1.88e-29:113:110:111#Trans_reg_C:148:4.94e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000499505::NZ_HF922466.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60572-62507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN164_800060RefSeq proteinWP_022615217.1
Context group ID
GCF_000499505::NZ_HF922466.1::G00018Context members
BN164_RS06555BN164_RS06560
Partner locus tags
BN164_RS06555BN164_RS06560
Partner old locus tags
BN164_800060BN164_800061
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022615217.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GWY8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GWY8_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN164_RS06555Primary locus identifier stored in the genes table.
Old locus tagBN164_800060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF922466.1Sequence record reported by the local genomic context database.
Genomic interval60 572-61 276 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 572-62 507 ntGCF_000499505::NZ_HF922466.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000499505::NZ_HF922466.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF922466.1All displayed genes belong to this local TCS context.
Neighborhood span60 572-62 507 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 572 nt62 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN164_RS06555GCF_000499505#BN164_RS06555
RROmpRCurrent focus
60 572-61 276 nt · Forward (+)
BN164_RS06560GCF_000499505#BN164_RS06560
HKClassic
61 254-62 507 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000164655#HMPREF0219_RS03000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862824
Simplified PFAM architecture for RROC_0862824
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862824
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000164655#HMPREF0219_RS03000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 060 · GCF_000499505
AssemblyT20 · Scaffoldhaploid
Genome composition3 815 975 bp · 28,5% GCClostridioides difficile T20
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key