1 Response_reg#1
4-118 aa · 115 aa · 48.9% of protein
Raw token
Response_reg:4:9.64e-19:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0113685
Response regulator LytTR family
Blautia wexlerae DSM 19850 · GCF_000484655
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000484655#K316_RS0113685Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 235 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 39.1% of protein
Raw token
LytTR:138:0.000000000000141:229:97:98- Raw architecture: Response_reg:4:9.64e-19:118:117:111#LytTR:138:0.000000000000141:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000484655::NZ_AXVN01000051.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27616-28323Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000051.1::G00056Context members
K316_RS0113685
Partner locus tags
K316_RS0113685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025579789.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7ELZ9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7ELZ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0113685Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000051.1Sequence record reported by the local genomic context database.
Genomic interval27 616-28 323 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 616-28 323 ntGCF_000484655::NZ_AXVN01000051.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000051.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000051.1All displayed genes belong to this local TCS context.
Neighborhood span27 616-28 323 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 616 nt28 323 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K316_RS0113685GCF_000484655#K316_RS0113685
RRLytTRCurrent focus
27 616-28 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0113685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018381
Simplified PFAM architecture for RROC_1018381
PFAM domain coverage: 203 / 235 aa (86.4%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_1018381
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0113685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key