1 dCache_1#1
146-269 aa · 124 aa · 20.5% of protein
Raw token
dCache_1:146:0.000000209:269:124:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0111530
Histidine kinase, Classic
Blautia wexlerae DSM 19850 · GCF_000484655
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0111530Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage310 / 606 aa (51.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-478 aa · 86 aa · 14.2% of protein
Raw token
His_kinase:393:4.94e-22:478:86:803 HATPase_c#3
501-600 aa · 100 aa · 16.5% of protein
Raw token
HATPase_c:501:0.0000000141:600:104:109- Raw architecture: dCache_1:146:0.000000209:269:124:195#His_kinase:393:4.94e-22:478:86:80#HATPase_c:501:0.0000000141:600:104:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000038.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21684-25043Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000038.1::G00046Context members
K316_RS0111530K316_RS0111535
Partner locus tags
K316_RS0111530K316_RS0111535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025579321.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RGA4Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RGA4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0111530Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000038.1Sequence record reported by the local genomic context database.
Genomic interval21 684-23 504 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 684-25 043 ntGCF_000484655::NZ_AXVN01000038.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000038.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000038.1All displayed genes belong to this local TCS context.
Neighborhood span21 684-25 043 nt3 360 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 684 nt25 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0111530GCF_000484655#K316_RS0111530
HKClassicCurrent focus
21 684-23 504 nt · Forward (+)
K316_RS0111535GCF_000484655#K316_RS0111535
RRunclassified
23 559-25 043 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0111530The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1023425
Simplified PFAM architecture for HKOC_1023425
PFAM domain coverage: 84 / 606 aa (13.9%)
1 aa606 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[394-477]
- Domain count: 1
- Matched identifier: HKOC_1023425
- Positioned domains: His_kinase 394-477
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0111530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key