1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:9.69e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0110075
Response regulator OmpR family
Blautia wexlerae DSM 19850 · GCF_000484655
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0110075Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:1.13e-29:228:77:77- Raw architecture: Response_reg:4:9.69e-38:113:111:111#Trans_reg_C:152:1.13e-29:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000031.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25472-28933Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000031.1::G00038Context members
K316_RS0110075K316_RS0110080
Partner locus tags
K316_RS0110075K316_RS0110080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025579007.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0110075Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000031.1Sequence record reported by the local genomic context database.
Genomic interval25 472-26 167 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 472-28 933 ntGCF_000484655::NZ_AXVN01000031.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000031.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000031.1All displayed genes belong to this local TCS context.
Neighborhood span25 472-28 933 nt3 462 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 472 nt28 933 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0110075GCF_000484655#K316_RS0110075
RROmpRCurrent focus
25 472-26 167 nt · Forward (+)
K316_RS0110080GCF_000484655#K316_RS0110080
HKClassic
26 252-28 933 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0110075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1160296
Simplified PFAM architecture for RROC_1160296
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[153-227]
- Domain count: 2
- Matched identifier: RROC_1160296
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 153-227 ; Trans_reg_C 153-227
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0110075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key