1 HisKA#1
472-538 aa · 67 aa · 7.7% of protein
Raw token
HisKA:472:2.1e-16:538:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0105020
Histidine kinase, Hybrid
Blautia wexlerae DSM 19850 · GCF_000484655
ClassHKTypeHybridLength870 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000484655#K316_RS0105020Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length870 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage300 / 870 aa (34.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa870 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
585-699 aa · 115 aa · 13.2% of protein
Raw token
HATPase_c:585:1.36e-29:699:115:1093 Response_reg#3
740-857 aa · 118 aa · 13.6% of protein
Raw token
Response_reg:740:4.98e-30:857:118:111- Raw architecture: HisKA:472:2.1e-16:538:67:64#HATPase_c:585:1.36e-29:699:115:109#Response_reg:740:4.98e-30:857:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000484655::NZ_AXVN01000011.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span39462-42074Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000011.1::G00020Context members
K316_RS0105020
Partner locus tags
K316_RS0105020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025577818.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0105020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000011.1Sequence record reported by the local genomic context database.
Genomic interval39 462-42 074 nt2 613 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 462-42 074 ntGCF_000484655::NZ_AXVN01000011.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000011.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000011.1All displayed genes belong to this local TCS context.
Neighborhood span39 462-42 074 nt2 613 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 462 nt42 074 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K316_RS0105020GCF_000484655#K316_RS0105020
HKHybridCurrent focus
39 462-42 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0105020The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0458296
Simplified PFAM architecture for HKOC_0458296
PFAM domain coverage: 297 / 870 aa (34.1%)
1 aa870 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[473-538] | HATPase_c[586-700] | Response_reg[740-855]
- Domain count: 3
- Matched identifier: HKOC_0458296
- Positioned domains: HisKA 473-538 ; HATPase_c 586-700 ; Response_reg 740-855
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0105020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key