1 HAMP#1
317-386 aa · 70 aa · 11.5% of protein
Raw token
HAMP:317:0.00000000319:386:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0104075
Histidine kinase, Classic
Blautia wexlerae DSM 19850 · GCF_000484655
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0104075Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 607 aa (42.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
401-480 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:401:3.52e-26:480:80:803 HATPase_c#3
500-605 aa · 106 aa · 17.5% of protein
Raw token
HATPase_c:500:0.0000000000000577:605:109:109- Raw architecture: HAMP:317:0.00000000319:386:71:69#His_kinase:401:3.52e-26:480:80:80#HATPase_c:500:0.0000000000000577:605:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000008.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60171-63571Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000008.1::G00014Context members
K316_RS0104070K316_RS0104075
Partner locus tags
K316_RS0104070K316_RS0104075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025577586.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0104075Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000008.1Sequence record reported by the local genomic context database.
Genomic interval61 748-63 571 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 171-63 571 ntGCF_000484655::NZ_AXVN01000008.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000008.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000008.1All displayed genes belong to this local TCS context.
Neighborhood span60 171-63 571 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 171 nt63 571 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0104070GCF_000484655#K316_RS0104070
RRunclassified
60 171-61 730 nt · Forward (+)
K316_RS0104075GCF_000484655#K316_RS0104075
HKClassicCurrent focus
61 748-63 571 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0104075The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1018910
Simplified PFAM architecture for HKOC_1018910
PFAM domain coverage: 184 / 607 aa (30.3%)
1 aa607 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[401-479] | HATPase_c[500-604]
- Domain count: 2
- Matched identifier: HKOC_1018910
- Positioned domains: His_kinase 401-479 ; HATPase_c 500-604
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0104075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key