1 Response_reg#1
4-115 aa · 112 aa · 21.6% of protein
Raw token
Response_reg:4:4.65e-26:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0104070
Response regulator, unclassified
Blautia wexlerae DSM 19850 · GCF_000484655
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0104070Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 519 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
424-466 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:424:0.00000123:466:43:423 HTH_AraC#3
481-515 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:481:0.0000000706:515:35:42- Raw architecture: Response_reg:4:4.65e-26:115:113:111#HTH_AraC:424:0.00000123:466:43:42#HTH_AraC:481:0.0000000706:515:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000008.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60171-63571Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000008.1::G00014Context members
K316_RS0104070K316_RS0104075
Partner locus tags
K316_RS0104070K316_RS0104075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025577584.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0104070Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000008.1Sequence record reported by the local genomic context database.
Genomic interval60 171-61 730 nt1 560 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 171-63 571 ntGCF_000484655::NZ_AXVN01000008.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000008.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000008.1All displayed genes belong to this local TCS context.
Neighborhood span60 171-63 571 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 171 nt63 571 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0104070GCF_000484655#K316_RS0104070
RRunclassifiedCurrent focus
60 171-61 730 nt · Forward (+)
K316_RS0104075GCF_000484655#K316_RS0104075
HKClassic
61 748-63 571 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0104070The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127358
Simplified PFAM architecture for RROC_0127358
PFAM domain coverage: 189 / 519 aa (36.4%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[440-516]
- Domain count: 2
- Matched identifier: RROC_0127358
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 440-516 ; HTH_18 440-516
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0104070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key