1 Response_reg#1
3-123 aa · 121 aa · 49.8% of protein
Raw token
Response_reg:3:0.0000148:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UO3_RS08435
Response regulator LytTR family
Enterococcus faecalis EnGen0286 · GCF_000478325
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000478325#UO3_RS08435Stable P2CS identifier used across views.
GenomeGCF_000478325Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 243 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-241 aa · 93 aa · 38.3% of protein
Raw token
LytTR:149:1.63e-21:241:98:98- Raw architecture: Response_reg:3:0.0000148:123:121:111#LytTR:149:1.63e-21:241:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000478325::NZ_AJET01000006.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1225381-1226112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUO3_01653RefSeq proteinWP_073340375.1
Context group ID
GCF_000478325::NZ_AJET01000006.1::G00013Context members
UO3_RS08435
Partner locus tags
UO3_RS08435
Partner old locus tags
UO3_01653
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_073340375.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW7KAM8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW7KAM8_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUO3_RS08435Primary locus identifier stored in the genes table.
Old locus tagUO3_01653Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AJET01000006.1Sequence record reported by the local genomic context database.
Genomic interval1 225 381-1 226 112 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 225 381-1 226 112 ntGCF_000478325::NZ_AJET01000006.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000478325::NZ_AJET01000006.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AJET01000006.1All displayed genes belong to this local TCS context.
Neighborhood span1 225 381-1 226 112 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 225 381 nt1 226 112 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
UO3_RS08435GCF_000478325#UO3_RS08435
RRLytTRCurrent focus
1 225 381-1 226 112 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147295#HMPREF9497_RS11845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824776
Simplified PFAM architecture for RROC_0824776
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-121] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0824776
- Positioned domains: Response_reg 16-121 ; Response_reg 16-121 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_000147295#HMPREF9497_RS11845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 158 672 · GCF_000478325
AssemblyEnte_faec_T15_V1 · Contighaploid
Genome composition2 923 624 bp · 37,5% GCEnterococcus faecalis EnGen0286
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key