1 Response_reg#1
3-112 aa · 110 aa · 50.2% of protein
Raw token
Response_reg:3:5.9e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C678_RS02950
Response regulator OmpR family
Clostridioides difficile F665 · GCF_000473705
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000473705#C678_RS02950Stable P2CS identifier used across views.
GenomeGCF_000473705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 219 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-219 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:145:9.98e-21:219:76:77- Raw architecture: Response_reg:3:5.9e-24:112:111:111#Trans_reg_C:145:9.98e-21:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000473705::NZ_AWZN01000012.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3256-3915Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC678_0571RefSeq proteinWP_009264385.1
Context group ID
GCF_000473705::NZ_AWZN01000012.1::G00007Context members
C678_RS02950
Partner locus tags
C678_RS02950
Partner old locus tags
C678_0571
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009264385.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZJ63Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZJ63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC678_RS02950Primary locus identifier stored in the genes table.
Old locus tagC678_0571Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWZN01000012.1Sequence record reported by the local genomic context database.
Genomic interval3 256-3 915 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 256-3 915 ntGCF_000473705::NZ_AWZN01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000473705::NZ_AWZN01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWZN01000012.1All displayed genes belong to this local TCS context.
Neighborhood span3 256-3 915 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 256 nt3 915 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C678_RS02950GCF_000473705#C678_RS02950
RROmpRCurrent focus
3 256-3 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS11860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1768032
Simplified PFAM architecture for RROC_1768032
PFAM domain coverage: 184 / 219 aa (84.0%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1768032
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS11860
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 117 total members. Page 1 / 3.
GCF_000235905#HMPREF9945_RS11860 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 232 197 · GCF_000473705
AssemblyASM47370v2 · Contighaploid
Genome composition4 082 320 bp · 28,5% GCClostridioides difficile F665
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key