1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.00000368:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C678_RS00840
Histidine kinase, Classic
Clostridioides difficile F665 · GCF_000473705
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000473705#C678_RS00840Stable P2CS identifier used across views.
GenomeGCF_000473705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 343 aa (50.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-340 aa · 106 aa · 30.9% of protein
Raw token
HATPase_c:235:3.36e-27:340:106:109- Raw architecture: HisKA:124:0.00000368:189:66:64#HATPase_c:235:3.36e-27:340:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000473705::NZ_AWZN01000006.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66509-68223Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000473705::NZ_AWZN01000006.1::G00002Context members
C678_RS00835C678_RS00840
Partner locus tags
C678_RS00835C678_RS00840
Partner old locus tags
C678_0145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032542085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC678_RS00840Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AWZN01000006.1Sequence record reported by the local genomic context database.
Genomic interval67 192-68 223 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 509-68 223 ntGCF_000473705::NZ_AWZN01000006.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000473705::NZ_AWZN01000006.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWZN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span66 509-68 223 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 509 nt68 223 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C678_RS00835GCF_000473705#C678_RS00835
RROmpR
66 509-67 195 nt · Forward (+)
C678_RS00840GCF_000473705#C678_RS00840
HKClassicCurrent focus
67 192-68 223 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450085#QIW_RS00105Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827965
Simplified PFAM architecture for HKOC_2827965
PFAM domain coverage: 172 / 343 aa (50.1%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-340]
- Domain count: 2
- Matched identifier: HKOC_2827965
- Positioned domains: HisKA 124-189 ; HATPase_c 235-340
Cluster members and taxonomy
Representative gene: GCF_000450085#QIW_RS00105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 232 197 · GCF_000473705
AssemblyASM47370v2 · Contighaploid
Genome composition4 082 320 bp · 28,5% GCClostridioides difficile F665
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key