1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000307:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C678_RS00795
Histidine kinase, Classic
Clostridioides difficile F665 · GCF_000473705
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000473705#C678_RS00795Stable P2CS identifier used across views.
GenomeGCF_000473705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 305 aa (73.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.000000038:150:66:643 HATPase_c#3
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:4.02e-30:305:104:109- Raw architecture: HAMP:4:0.0000307:56:53:69#HisKA:85:0.000000038:150:66:64#HATPase_c:202:4.02e-30:305:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000473705::NZ_AWZN01000006.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60593-62208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC678_0139RefSeq proteinWP_021395513.1
Context group ID
GCF_000473705::NZ_AWZN01000006.1::G00001Context members
C678_RS00790C678_RS00795
Partner locus tags
C678_RS00790C678_RS00795
Partner old locus tags
C678_0138C678_0139
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC678_RS00795Primary locus identifier stored in the genes table.
Old locus tagC678_0139Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWZN01000006.1Sequence record reported by the local genomic context database.
Genomic interval61 291-62 208 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 593-62 208 ntGCF_000473705::NZ_AWZN01000006.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000473705::NZ_AWZN01000006.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWZN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span60 593-62 208 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 593 nt62 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C678_RS00790GCF_000473705#C678_RS00790
RROmpR
60 593-61 285 nt · Forward (+)
C678_RS00795GCF_000473705#C678_RS00795
HKClassicCurrent focus
61 291-62 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450085#QIW_RS00060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882100
Simplified PFAM architecture for HKOC_2882100
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882100
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_000450085#QIW_RS00060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 232 197 · GCF_000473705
AssemblyASM47370v2 · Contighaploid
Genome composition4 082 320 bp · 28,5% GCClostridioides difficile F665
Signal transduction countsGenes 103 · HK 49 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key