1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:2.71e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUQ_RS12885
Response regulator OmpR family
Clostridioides difficile P68 · GCF_000473685
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000473685#QUQ_RS12885Stable P2CS identifier used across views.
GenomeGCF_000473685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:4.98e-32:227:77:77- Raw architecture: Response_reg:4:2.71e-28:113:111:111#Trans_reg_C:151:4.98e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000473685::NZ_AWZM01000041.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263104-265115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUQ_2591RefSeq proteinWP_021418537.1
Context group ID
GCF_000473685::NZ_AWZM01000041.1::G00039Context members
QUQ_RS12880QUQ_RS12885
Partner locus tags
QUQ_RS12880QUQ_RS12885
Partner old locus tags
QUQ_2590QUQ_2591
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021418537.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUQ_RS12885Primary locus identifier stored in the genes table.
Old locus tagQUQ_2591Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWZM01000041.1Sequence record reported by the local genomic context database.
Genomic interval264 408-265 115 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span263 104-265 115 ntGCF_000473685::NZ_AWZM01000041.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000473685::NZ_AWZM01000041.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWZM01000041.1All displayed genes belong to this local TCS context.
Neighborhood span263 104-265 115 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 104 nt265 115 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUQ_RS12880GCF_000473685#QUQ_RS12880
HKClassic
263 104-264 414 nt · Reverse (-)
QUQ_RS12885GCF_000473685#QUQ_RS12885
RROmpRCurrent focus
264 408-265 115 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451665#QS3_RS12670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018275
Simplified PFAM architecture for RROC_1018275
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1018275
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000451665#QS3_RS12670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 432 · GCF_000473685
AssemblyASM47368v2 · Contighaploid
Genome composition4 056 190 bp · 28,5% GCClostridioides difficile P68
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key