1 Response_reg#1
2-64 aa · 63 aa · 35.8% of protein
Raw token
Response_reg:2:0.000000000815:64:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSS_RS16555
Response regulator OmpR family
Clostridioides difficile P33 · GCF_000473585
ClassRRTypeOmpRLength176 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000473585#QSS_RS16555Stable P2CS identifier used across views.
GenomeGCF_000473585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length176 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage137 / 176 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa176 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
100-173 aa · 74 aa · 42.0% of protein
Raw token
Trans_reg_C:100:1.68e-22:173:75:77- Raw architecture: Response_reg:2:0.000000000815:64:64:111#Trans_reg_C:100:1.68e-22:173:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000473585::NZ_AWZI01000045.1::G00053
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span42560-46053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSS_3384RefSeq proteinWP_320535635.1
Context group ID
GCF_000473585::NZ_AWZI01000045.1::G00053Context members
QSS_RS16555QSS_RS16560QSS_RS16565
Partner locus tags
QSS_RS16555QSS_RS16560QSS_RS16565
Partner old locus tags
QSS_3384QSS_3386QSS_3387
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320535635.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSS_RS16555Primary locus identifier stored in the genes table.
Old locus tagQSS_3384Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AWZI01000045.1Sequence record reported by the local genomic context database.
Genomic interval42 560-43 090 nt531 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 560-46 053 ntGCF_000473585::NZ_AWZI01000045.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000473585::NZ_AWZI01000045.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AWZI01000045.1All displayed genes belong to this local TCS context.
Neighborhood span42 560-46 053 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 560 nt46 053 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QSS_RS16555GCF_000473585#QSS_RS16555
RROmpRCurrent focus
42 560-43 090 nt · Reverse (-)
QSS_RS16560GCF_000473585#QSS_RS16560
HKClassic
43 289-45 304 nt · Reverse (-)
QSS_RS16565GCF_000473585#QSS_RS16565
RROmpR
45 376-46 053 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000473585#QSS_RS16555The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2192410
Simplified PFAM architecture for RROC_2192410
PFAM domain coverage: 136 / 176 aa (77.3%)
1 aa176 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-63] | Trans_reg_C[100-173]
- Domain count: 2
- Matched identifier: RROC_2192410
- Positioned domains: Response_reg 2-63 ; Response_reg 2-63 ; Trans_reg_C 100-173 ; Trans_reg_C 100-173
Cluster members and taxonomy
Representative gene: GCF_000473585#QSS_RS16555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 415 · GCF_000473585
AssemblyASM47358v2 · Contighaploid
Genome composition4 103 431 bp · 28,5% GCClostridioides difficile P33
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key