1 Response_reg#1
3-103 aa · 101 aa · 44.5% of protein
Raw token
Response_reg:3:1.77e-30:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1547_RS16795
Response regulator OmpR family
Blautia sp. KLE 1732 · GCF_000466565
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466565#HMPREF1547_RS16795Stable P2CS identifier used across views.
GenomeGCF_000466565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 227 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 33.5% of protein
Raw token
Trans_reg_C:146:1.41e-22:221:78:77- Raw architecture: Response_reg:3:1.77e-30:103:101:111#Trans_reg_C:146:1.41e-22:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466565::NZ_KE993450.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21935-23649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1547_01797RefSeq proteinWP_021653123.1
Context group ID
GCF_000466565::NZ_KE993450.1::G00047Context members
HMPREF1547_RS16790HMPREF1547_RS16795
Partner locus tags
HMPREF1547_RS16790HMPREF1547_RS16795
Partner old locus tags
HMPREF1547_01796HMPREF1547_01797
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021653123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1547_RS16795Primary locus identifier stored in the genes table.
Old locus tagHMPREF1547_01797Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993450.1Sequence record reported by the local genomic context database.
Genomic interval22 966-23 649 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 935-23 649 ntGCF_000466565::NZ_KE993450.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466565::NZ_KE993450.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993450.1All displayed genes belong to this local TCS context.
Neighborhood span21 935-23 649 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 935 nt23 649 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1547_RS16790GCF_000466565#HMPREF1547_RS16790
HKClassic
21 935-22 969 nt · Reverse (-)
HMPREF1547_RS16795GCF_000466565#HMPREF1547_RS16795
RROmpRCurrent focus
22 966-23 649 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS16795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356974
Simplified PFAM architecture for RROC_1356974
PFAM domain coverage: 183 / 227 aa (80.6%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[147-220]
- Domain count: 2
- Matched identifier: RROC_1356974
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 147-220 ; Trans_reg_C 147-220
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS16795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 324 · GCF_000466565
AssemblyASM46656v1 · Scaffoldhaploid
Genome composition3 573 774 bp · 44,0% GCBlautia sp. KLE 1732
Signal transduction countsGenes 80 · HK 39 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key