1 Response_reg#1
5-114 aa · 110 aa · 20.8% of protein
Raw token
Response_reg:5:7.3e-32:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1547_RS13755
Response regulator, unclassified
Blautia sp. KLE 1732 · GCF_000466565
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466565#HMPREF1547_RS13755Stable P2CS identifier used across views.
GenomeGCF_000466565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 529 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
433-475 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:433:0.0000612:475:43:423 HTH_AraC#3
490-525 aa · 36 aa · 6.8% of protein
Raw token
HTH_AraC:490:0.0000229:525:36:42- Raw architecture: Response_reg:5:7.3e-32:114:110:111#HTH_AraC:433:0.0000612:475:43:42#HTH_AraC:490:0.0000229:525:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466565::NZ_KE993409.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13782-16016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1547_01436RefSeq proteinWP_021652527.1
Context group ID
GCF_000466565::NZ_KE993409.1::G00040Context members
HMPREF1547_RS13755HMPREF1547_RS13760
Partner locus tags
HMPREF1547_RS13755HMPREF1547_RS13760
Partner old locus tags
HMPREF1547_01436HMPREF1547_01437
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021652527.1Primary protein accession used for annex mappings.
UniProt accessionA0A564W3Y4Primary UniProt accession resolved in the annex database.
UniProt IDA0A564W3Y4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1547_RS13755Primary locus identifier stored in the genes table.
Old locus tagHMPREF1547_01436Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993409.1Sequence record reported by the local genomic context database.
Genomic interval13 782-15 371 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 782-16 016 ntGCF_000466565::NZ_KE993409.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466565::NZ_KE993409.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993409.1All displayed genes belong to this local TCS context.
Neighborhood span13 782-16 016 nt2 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 782 nt16 016 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1547_RS13755GCF_000466565#HMPREF1547_RS13755
RRunclassifiedCurrent focus
13 782-15 371 nt · Reverse (-)
HMPREF1547_RS13760GCF_000466565#HMPREF1547_RS13760
HKClassic
15 374-16 016 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS13755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112823
Simplified PFAM architecture for RROC_0112823
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[447-526]
- Domain count: 2
- Matched identifier: RROC_0112823
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 447-526 ; HTH_18 447-526
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS13755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 324 · GCF_000466565
AssemblyASM46656v1 · Scaffoldhaploid
Genome composition3 573 774 bp · 44,0% GCBlautia sp. KLE 1732
Signal transduction countsGenes 80 · HK 39 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key