1 Response_reg#1
6-115 aa · 110 aa · 20.6% of protein
Raw token
Response_reg:6:3.54e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1547_RS12180
Response regulator, unclassified
Blautia sp. KLE 1732 · GCF_000466565
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466565#HMPREF1547_RS12180Stable P2CS identifier used across views.
GenomeGCF_000466565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 535 aa (33.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-472 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:436:0.000023:472:37:423 HTH_AraC#3
489-520 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:489:0.000000169:520:32:42- Raw architecture: Response_reg:6:3.54e-23:115:111:111#HTH_AraC:436:0.000023:472:37:42#HTH_AraC:489:0.000000169:520:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466565::NZ_KE993391.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25953-29369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1547_01110RefSeq proteinWP_021652212.1
Context group ID
GCF_000466565::NZ_KE993391.1::G00034Context members
HMPREF1547_RS12175HMPREF1547_RS12180
Partner locus tags
HMPREF1547_RS12175HMPREF1547_RS12180
Partner old locus tags
HMPREF1547_01108HMPREF1547_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021652212.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WB80Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WB80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1547_RS12180Primary locus identifier stored in the genes table.
Old locus tagHMPREF1547_01110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993391.1Sequence record reported by the local genomic context database.
Genomic interval27 762-29 369 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 953-29 369 ntGCF_000466565::NZ_KE993391.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466565::NZ_KE993391.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993391.1All displayed genes belong to this local TCS context.
Neighborhood span25 953-29 369 nt3 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 953 nt29 369 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1547_RS12175GCF_000466565#HMPREF1547_RS12175
HKClassic
25 953-27 743 nt · Forward (+)
HMPREF1547_RS12180GCF_000466565#HMPREF1547_RS12180
RRunclassifiedCurrent focus
27 762-29 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS12180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0100533
Simplified PFAM architecture for RROC_0100533
PFAM domain coverage: 187 / 535 aa (35.0%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-114] | HTH_18[444-520]
- Domain count: 2
- Matched identifier: RROC_0100533
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; HTH_18 444-520 ; HTH_18 444-520
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS12180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 324 · GCF_000466565
AssemblyASM46656v1 · Scaffoldhaploid
Genome composition3 573 774 bp · 44,0% GCBlautia sp. KLE 1732
Signal transduction countsGenes 80 · HK 39 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key