1 Response_reg#1
261-373 aa · 113 aa · 14.0% of protein
Raw token
Response_reg:261:9.34e-16:373:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1547_RS06200
Response regulator, PleD_VieA family
Blautia sp. KLE 1732 · GCF_000466565
ClassRRTypePleD_VieALength808 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466565#HMPREF1547_RS06200Stable P2CS identifier used across views.
GenomeGCF_000466565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length808 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage456 / 808 aa (56.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa808 aa
Domain-by-domain annotation3 items
2 GGDEF#2
390-497 aa · 108 aa · 13.4% of protein
Raw token
GGDEF:390:2.04e-20:497:111:1603 EAL#3
555-789 aa · 235 aa · 29.1% of protein
Raw token
EAL:555:1.65e-65:789:237:235- Raw architecture: Response_reg:261:9.34e-16:373:114:111#GGDEF:390:2.04e-20:497:111:160#EAL:555:1.65e-65:789:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466565::NZ_KE993332.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span50993-53419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1547_02738RefSeq proteinWP_227945596.1
Context group ID
GCF_000466565::NZ_KE993332.1::G00014Context members
HMPREF1547_RS06200
Partner locus tags
HMPREF1547_RS06200
Partner old locus tags
HMPREF1547_02738
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227945596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1547_RS06200Primary locus identifier stored in the genes table.
Old locus tagHMPREF1547_02738Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993332.1Sequence record reported by the local genomic context database.
Genomic interval50 993-53 419 nt2 427 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 993-53 419 ntGCF_000466565::NZ_KE993332.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466565::NZ_KE993332.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993332.1All displayed genes belong to this local TCS context.
Neighborhood span50 993-53 419 nt2 427 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 993 nt53 419 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1547_RS06200GCF_000466565#HMPREF1547_RS06200
RRPleD_VieACurrent focus
50 993-53 419 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS06200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015543
Simplified PFAM architecture for RROC_0015543
PFAM domain coverage: 447 / 808 aa (55.3%)
1 aa808 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[261-372] | GGDEF[390-490] | EAL[556-789]
- Domain count: 3
- Matched identifier: RROC_0015543
- Positioned domains: Response_reg 261-372 ; Response_reg 261-372 ; GGDEF 390-490 ; GGDEF 390-490 ; EAL 556-789 ; EAL 556-789
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS06200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 324 · GCF_000466565
AssemblyASM46656v1 · Scaffoldhaploid
Genome composition3 573 774 bp · 44,0% GCBlautia sp. KLE 1732
Signal transduction countsGenes 80 · HK 39 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key