1 Response_reg#1
4-116 aa · 113 aa · 28.7% of protein
Raw token
Response_reg:4:2.2e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1547_RS04645
Response regulator, unclassified
Blautia sp. KLE 1732 · GCF_000466565
ClassRRTypeunclassifiedLength394 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466565#HMPREF1547_RS04645Stable P2CS identifier used across views.
GenomeGCF_000466565Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length394 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 394 aa (28.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa394 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.2e-33:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466565::NZ_KE993319.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1791-5006Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1547_02629RefSeq proteinWP_021650826.1
Context group ID
GCF_000466565::NZ_KE993319.1::G00010Context members
HMPREF1547_RS04640HMPREF1547_RS04645
Partner locus tags
HMPREF1547_RS04640HMPREF1547_RS04645
Partner old locus tags
HMPREF1547_02627HMPREF1547_02629
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021650826.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1547_RS04645Primary locus identifier stored in the genes table.
Old locus tagHMPREF1547_02629Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993319.1Sequence record reported by the local genomic context database.
Genomic interval3 822-5 006 nt1 185 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 791-5 006 ntGCF_000466565::NZ_KE993319.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466565::NZ_KE993319.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993319.1All displayed genes belong to this local TCS context.
Neighborhood span1 791-5 006 nt3 216 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 791 nt5 006 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1547_RS04640GCF_000466565#HMPREF1547_RS04640
HKClassic
1 791-3 494 nt · Reverse (-)
HMPREF1547_RS04645GCF_000466565#HMPREF1547_RS04645
RRunclassifiedCurrent focus
3 822-5 006 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS04645The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0397857
Simplified PFAM architecture for RROC_0397857
PFAM domain coverage: 112 / 394 aa (28.4%)
1 aa394 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_0397857
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS04645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 324 · GCF_000466565
AssemblyASM46656v1 · Scaffoldhaploid
Genome composition3 573 774 bp · 44,0% GCBlautia sp. KLE 1732
Signal transduction countsGenes 80 · HK 39 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key