1 Response_reg#1
5-92 aa · 88 aa · 42.3% of protein
Raw token
Response_reg:5:3.39e-22:92:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1587_RS02175
Response regulator OmpR family
Bifidobacterium breve JCP7499 · GCF_000466545
ClassRRTypeOmpRLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466545#HMPREF1587_RS02175Stable P2CS identifier used across views.
GenomeGCF_000466545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 208 aa (76.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
131-201 aa · 71 aa · 34.1% of protein
Raw token
Trans_reg_C:131:1.12e-22:201:74:77- Raw architecture: Response_reg:5:3.39e-22:92:88:111#Trans_reg_C:131:1.12e-22:201:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466545::NZ_KE993257.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28919-29545Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1587_01022RefSeq proteinWP_021649724.1
Context group ID
GCF_000466545::NZ_KE993257.1::G00016Context members
HMPREF1587_RS02175
Partner locus tags
HMPREF1587_RS02175
Partner old locus tags
HMPREF1587_01022
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021649724.1Primary protein accession used for annex mappings.
UniProt accessionA0A133KXG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A133KXG8_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1587_RS02175Primary locus identifier stored in the genes table.
Old locus tagHMPREF1587_01022Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993257.1Sequence record reported by the local genomic context database.
Genomic interval28 919-29 545 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 919-29 545 ntGCF_000466545::NZ_KE993257.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466545::NZ_KE993257.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993257.1All displayed genes belong to this local TCS context.
Neighborhood span28 919-29 545 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 919 nt29 545 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1587_RS02175GCF_000466545#HMPREF1587_RS02175
RROmpRCurrent focus
28 919-29 545 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466545#HMPREF1587_RS02175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2057723
Simplified PFAM architecture for RROC_2057723
PFAM domain coverage: 158 / 208 aa (76.0%)
1 aa208 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-91] | Trans_reg_C[131-201]
- Domain count: 2
- Matched identifier: RROC_2057723
- Positioned domains: Response_reg 5-91 ; Response_reg 5-91 ; Trans_reg_C 131-201 ; Trans_reg_C 131-201
Cluster members and taxonomy
Representative gene: GCF_000466545#HMPREF1587_RS02175
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 36 over 36 total members. Page 1 / 1.
GCF_000466545#HMPREF1587_RS02175 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 261 072 · GCF_000466545
AssemblyASM46654v1 · Scaffoldhaploid
Genome composition2 369 717 bp · 58,5% GCBifidobacterium breve JCP7499
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key