1 HisKA#1
76-136 aa · 61 aa · 20.7% of protein
Raw token
HisKA:76:0.00000000000247:136:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QW7_RS05590
Histidine kinase, Classic
Clostridioides difficile P77 · GCF_000452205
ClassHKTypeClassicLength294 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000452205#QW7_RS05590Stable P2CS identifier used across views.
GenomeGCF_000452205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length294 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 294 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
183-288 aa · 106 aa · 36.1% of protein
Raw token
HATPase_c:183:8.97e-27:288:107:109- Raw architecture: HisKA:76:0.00000000000247:136:61:64#HATPase_c:183:8.97e-27:288:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000452205::NZ_AVNA01000025.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65810-67744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQW7_1141RefSeq proteinWP_234780185.1
Context group ID
GCF_000452205::NZ_AVNA01000025.1::G00017Context members
QW7_RS05585QW7_RS05590
Partner locus tags
QW7_RS05585QW7_RS05590
Partner old locus tags
QW7_1139QW7_1141
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234780185.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQW7_RS05590Primary locus identifier stored in the genes table.
Old locus tagQW7_1141Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVNA01000025.1Sequence record reported by the local genomic context database.
Genomic interval66 860-67 744 nt885 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 810-67 744 ntGCF_000452205::NZ_AVNA01000025.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000452205::NZ_AVNA01000025.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVNA01000025.1All displayed genes belong to this local TCS context.
Neighborhood span65 810-67 744 nt1 935 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 810 nt67 744 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QW7_RS05585GCF_000452205#QW7_RS05585
RROmpR
65 810-66 493 nt · Forward (+)
QW7_RS05590GCF_000452205#QW7_RS05590
HKClassicCurrent focus
66 860-67 744 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS05735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328360
Simplified PFAM architecture for HKOC_2328360
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2328360
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 440 · GCF_000452205
AssemblyASM45220v2 · Contighaploid
Genome composition4 155 874 bp · 28,5% GCClostridioides difficile P77
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key