1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:3.03e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QW3_RS09940
Response regulator, AmiR_NasR family
Clostridioides difficile P74 · GCF_000452165
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000452165#QW3_RS09940Stable P2CS identifier used across views.
GenomeGCF_000452165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:1.52e-19:186:49:49- Raw architecture: Response_reg:5:3.03e-31:104:100:111#ANTAR:138:1.52e-19:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000452165::NZ_AVMY01000024.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61437-63414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQW3_1956RefSeq proteinWP_003428683.1
Context group ID
GCF_000452165::NZ_AVMY01000024.1::G00032Context members
QW3_RS09940QW3_RS09945
Partner locus tags
QW3_RS09940QW3_RS09945
Partner old locus tags
QW3_1956QW3_1957
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003428683.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YLI5Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YLI5_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQW3_RS09940Primary locus identifier stored in the genes table.
Old locus tagQW3_1956Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMY01000024.1Sequence record reported by the local genomic context database.
Genomic interval61 437-62 012 nt576 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 437-63 414 ntGCF_000452165::NZ_AVMY01000024.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000452165::NZ_AVMY01000024.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMY01000024.1All displayed genes belong to this local TCS context.
Neighborhood span61 437-63 414 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 437 nt63 414 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QW3_RS09940GCF_000452165#QW3_RS09940
RRAmiR_NasRCurrent focus
61 437-62 012 nt · Forward (+)
QW3_RS09945GCF_000452165#QW3_RS09945
HKClassic
62 005-63 414 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS09830Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2167791
Simplified PFAM architecture for RROC_2167791
PFAM domain coverage: 164 / 191 aa (85.9%)
1 aa191 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2167791
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; ANTAR 134-186 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS09830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 438 · GCF_000452165
AssemblyASM45216v2 · Contighaploid
Genome composition4 160 896 bp · 28,5% GCClostridioides difficile P74
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key