1 Response_reg#1
5-112 aa · 108 aa · 48.0% of protein
Raw token
Response_reg:5:2.69e-25:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUI_RS02315
Response regulator OmpR family
Clostridioides difficile P59 · GCF_000452005
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000452005#QUI_RS02315Stable P2CS identifier used across views.
GenomeGCF_000452005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:147:1e-29:223:77:77- Raw architecture: Response_reg:5:2.69e-25:112:109:111#Trans_reg_C:147:1e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000452005::NZ_AVMQ01000051.1::G00052
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span94835-100560Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUI_3498RefSeq proteinWP_021426833.1
Context group ID
GCF_000452005::NZ_AVMQ01000051.1::G00052Context members
QUI_RS02335QUI_RS02330QUI_RS02325QUI_RS02320QUI_RS02315
Partner locus tags
QUI_RS02335QUI_RS02330QUI_RS02325QUI_RS02320QUI_RS02315
Partner old locus tags
QUI_3494QUI_3495QUI_3496QUI_3497QUI_3498
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021426833.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUI_RS02315Primary locus identifier stored in the genes table.
Old locus tagQUI_3498Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMQ01000051.1Sequence record reported by the local genomic context database.
Genomic interval99 883-100 560 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 835-100 560 ntGCF_000452005::NZ_AVMQ01000051.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000452005::NZ_AVMQ01000051.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMQ01000051.1All displayed genes belong to this local TCS context.
Neighborhood span94 835-100 560 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 835 nt100 560 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
QUI_RS02335GCF_000452005#QUI_RS02335
HKClassic
94 835-95 950 nt · Reverse (-)
QUI_RS02330GCF_000452005#QUI_RS02330
RROmpR
95 986-96 684 nt · Reverse (-)
QUI_RS02325GCF_000452005#QUI_RS02325
RROmpR
97 066-97 746 nt · Reverse (-)
QUI_RS02320GCF_000452005#QUI_RS02320
HKClassic
97 796-99 811 nt · Reverse (-)
QUI_RS02315GCF_000452005#QUI_RS02315
RROmpRCurrent focus
99 883-100 560 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000452005#QUI_RS02315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466535
Simplified PFAM architecture for RROC_1466535
PFAM domain coverage: 185 / 225 aa (82.2%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-223]
- Domain count: 2
- Matched identifier: RROC_1466535
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-223 ; Trans_reg_C 147-223
Cluster members and taxonomy
Representative gene: GCF_000452005#QUI_RS02315
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 9 over 9 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 428 · GCF_000452005
AssemblyASM45200v1 · Contighaploid
Genome composition4 223 549 bp · 28,5% GCClostridioides difficile P59
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key