1 Response_reg#1
5-104 aa · 100 aa · 52.4% of protein
Raw token
Response_reg:5:7.81e-31:104:100:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUE_RS09400
Response regulator, AmiR_NasR family
Clostridioides difficile P51 · GCF_000451985
ClassRRTypeAmiR_NasRLength191 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451985#QUE_RS09400Stable P2CS identifier used across views.
GenomeGCF_000451985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length191 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 191 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa191 aa
Domain-by-domain annotation2 items
2 ANTAR#2
138-186 aa · 49 aa · 25.7% of protein
Raw token
ANTAR:138:2.78e-20:186:49:49- Raw architecture: Response_reg:5:7.81e-31:104:100:111#ANTAR:138:2.78e-20:186:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451985::NZ_AVMP01000026.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30495-32472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUE_2042RefSeq proteinWP_021425567.1
Context group ID
GCF_000451985::NZ_AVMP01000026.1::G00034Context members
QUE_RS09400QUE_RS09395
Partner locus tags
QUE_RS09400QUE_RS09395
Partner old locus tags
QUE_2042QUE_2043
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021425567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUE_RS09400Primary locus identifier stored in the genes table.
Old locus tagQUE_2042Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMP01000026.1Sequence record reported by the local genomic context database.
Genomic interval30 495-31 070 nt576 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 495-32 472 ntGCF_000451985::NZ_AVMP01000026.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451985::NZ_AVMP01000026.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMP01000026.1All displayed genes belong to this local TCS context.
Neighborhood span30 495-32 472 nt1 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 495 nt32 472 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUE_RS09400GCF_000451985#QUE_RS09400
RRAmiR_NasRCurrent focus
30 495-31 070 nt · Forward (+)
QUE_RS09395GCF_000451985#QUE_RS09395
HKClassic
31 063-32 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451985#QUE_RS09400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2167942
Simplified PFAM architecture for RROC_2167942
PFAM domain coverage: 164 / 191 aa (85.9%)
1 aa191 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[5-115] | ANTAR[134-186]
- Domain count: 2
- Matched identifier: RROC_2167942
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; ANTAR 134-186 ; ANTAR 134-186
Cluster members and taxonomy
Representative gene: GCF_000451985#QUE_RS09400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 426 · GCF_000451985
AssemblyASM45198v1 · Contighaploid
Genome composition4 256 776 bp · 29,0% GCClostridioides difficile P51
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key