1 Response_reg#1
7-114 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:7:1.2e-34:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSU_RS00040
Response regulator OmpR family
Clostridioides difficile P38 · GCF_000451825
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451825#QSU_RS00040Stable P2CS identifier used across views.
GenomeGCF_000451825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 229 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:151:1.04e-28:225:75:77- Raw architecture: Response_reg:7:1.2e-34:114:109:111#Trans_reg_C:151:1.04e-28:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451825::NZ_AVMH01000065.1::G00062
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5820-6509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSU_3837RefSeq proteinWP_021421907.1
Context group ID
GCF_000451825::NZ_AVMH01000065.1::G00062Context members
QSU_RS00040
Partner locus tags
QSU_RS00040
Partner old locus tags
QSU_3837
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021421907.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSU_RS00040Primary locus identifier stored in the genes table.
Old locus tagQSU_3837Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMH01000065.1Sequence record reported by the local genomic context database.
Genomic interval5 820-6 509 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 820-6 509 ntGCF_000451825::NZ_AVMH01000065.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451825::NZ_AVMH01000065.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMH01000065.1All displayed genes belong to this local TCS context.
Neighborhood span5 820-6 509 nt690 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 820 nt6 509 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSU_RS00040GCF_000451825#QSU_RS00040
RROmpRCurrent focus
5 820-6 509 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS18920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1249805
Simplified PFAM architecture for RROC_1249805
PFAM domain coverage: 182 / 229 aa (79.5%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-114] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1249805
- Positioned domains: Response_reg 7-114 ; Response_reg 7-114 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS18920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 416 · GCF_000451825
AssemblyASM45182v1 · Contighaploid
Genome composition4 123 891 bp · 28,5% GCClostridioides difficile P38
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key