1 Response_reg#1
3-115 aa · 113 aa · 45.6% of protein
Raw token
Response_reg:3:0.0000016:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSO_RS12845
Response regulator LytTR family
Clostridioides difficile P31 · GCF_000451785
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451785#QSO_RS12845Stable P2CS identifier used across views.
GenomeGCF_000451785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 248 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
153-247 aa · 95 aa · 38.3% of protein
Raw token
LytTR:153:0.00000000000000107:247:100:98- Raw architecture: Response_reg:3:0.0000016:115:113:111#LytTR:153:0.00000000000000107:247:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451785::NZ_AVMF01000037.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span223463-224209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSO_2613RefSeq proteinWP_009893681.1
Context group ID
GCF_000451785::NZ_AVMF01000037.1::G00043Context members
QSO_RS12845
Partner locus tags
QSO_RS12845
Partner old locus tags
QSO_2613
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893681.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NE40Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NE40_CLODCDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSO_RS12845Primary locus identifier stored in the genes table.
Old locus tagQSO_2613Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMF01000037.1Sequence record reported by the local genomic context database.
Genomic interval223 463-224 209 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223 463-224 209 ntGCF_000451785::NZ_AVMF01000037.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451785::NZ_AVMF01000037.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMF01000037.1All displayed genes belong to this local TCS context.
Neighborhood span223 463-224 209 nt747 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 463 nt224 209 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSO_RS12845GCF_000451785#QSO_RS12845
RRLytTRCurrent focus
223 463-224 209 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0213140Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0743179
Simplified PFAM architecture for RROC_0743179
PFAM domain coverage: 92 / 248 aa (37.1%)
1 aa248 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[155-246]
- Domain count: 1
- Matched identifier: RROC_0743179
- Positioned domains: LytTR 155-246 ; LytTR 155-246
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0213140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 413 · GCF_000451785
AssemblyASM45178v2 · Contighaploid
Genome composition4 102 663 bp · 28,5% GCClostridioides difficile P31
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key