1 HisKA#1
170-234 aa · 65 aa · 16.5% of protein
Raw token
HisKA:170:0.000000000000905:234:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSM_RS14890
Histidine kinase, Classic
Clostridioides difficile P30 · GCF_000451765
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451765#QSM_RS14890Stable P2CS identifier used across views.
GenomeGCF_000451765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 393 aa (44.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-391 aa · 110 aa · 28.0% of protein
Raw token
HATPase_c:282:6.77e-17:391:111:109- Raw architecture: HisKA:170:0.000000000000905:234:65:64#HATPase_c:282:6.77e-17:391:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451765::NZ_AVME01000018.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47029-49185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSM_0699RefSeq proteinWP_234703524.1
Context group ID
GCF_000451765::NZ_AVME01000018.1::G00016Context members
QSM_RS14895QSM_RS14890
Partner locus tags
QSM_RS14895QSM_RS14890
Partner old locus tags
QSM_0697QSM_0699
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234703524.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSM_RS14890Primary locus identifier stored in the genes table.
Old locus tagQSM_0699Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVME01000018.1Sequence record reported by the local genomic context database.
Genomic interval48 004-49 185 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 029-49 185 ntGCF_000451765::NZ_AVME01000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451765::NZ_AVME01000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVME01000018.1All displayed genes belong to this local TCS context.
Neighborhood span47 029-49 185 nt2 157 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 029 nt49 185 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QSM_RS14895GCF_000451765#QSM_RS14895
RROmpR
47 029-47 736 nt · Forward (+)
QSM_RS14890GCF_000451765#QSM_RS14890
HKClassicCurrent focus
48 004-49 185 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS14890The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503596
Simplified PFAM architecture for HKOC_2503596
PFAM domain coverage: 174 / 393 aa (44.3%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[170-235] | HATPase_c[283-390]
- Domain count: 2
- Matched identifier: HKOC_2503596
- Positioned domains: HisKA 170-235 ; HATPase_c 283-390
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS14890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 412 · GCF_000451765
AssemblyASM45176v1 · Contighaploid
Genome composition4 181 432 bp · 28,5% GCClostridioides difficile P30
Signal transduction countsGenes 107 · HK 52 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key