1 HisKA#1
146-209 aa · 64 aa · 17.4% of protein
Raw token
HisKA:146:0.00000000000576:209:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QS7_RS01850
Histidine kinase, Classic
Clostridioides difficile P19 · GCF_000451705
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451705#QS7_RS01850Stable P2CS identifier used across views.
GenomeGCF_000451705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 368 aa (44.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
259-358 aa · 100 aa · 27.2% of protein
Raw token
HATPase_c:259:5.5e-25:358:100:109- Raw architecture: HisKA:146:0.00000000000576:209:64:64#HATPase_c:259:5.5e-25:358:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451705::NZ_AVLW01000050.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163131-164958Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQS7_3524RefSeq proteinWP_021418927.1
Context group ID
GCF_000451705::NZ_AVLW01000050.1::G00057Context members
QS7_RS01850QS7_RS01845
Partner locus tags
QS7_RS01850QS7_RS01845
Partner old locus tags
QS7_3524QS7_3525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021418927.1Primary protein accession used for annex mappings.
UniProt accessionA0A096XUA5Primary UniProt accession resolved in the annex database.
UniProt IDA0A096XUA5_STRAPDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQS7_RS01850Primary locus identifier stored in the genes table.
Old locus tagQS7_3524Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLW01000050.1Sequence record reported by the local genomic context database.
Genomic interval163 131-164 237 nt1 107 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span163 131-164 958 ntGCF_000451705::NZ_AVLW01000050.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451705::NZ_AVLW01000050.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLW01000050.1All displayed genes belong to this local TCS context.
Neighborhood span163 131-164 958 nt1 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 131 nt164 958 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QS7_RS01850GCF_000451705#QS7_RS01850
HKClassicCurrent focus
163 131-164 237 nt · Reverse (-)
QS7_RS01845GCF_000451705#QS7_RS01845
RROmpR
164 251-164 958 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451705#QS7_RS01850The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698370
Simplified PFAM architecture for HKOC_2698370
PFAM domain coverage: 163 / 368 aa (44.3%)
1 aa368 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[147-209] | HATPase_c[259-358]
- Domain count: 2
- Matched identifier: HKOC_2698370
- Positioned domains: HisKA 147-209 ; HATPase_c 259-358
Cluster members and taxonomy
Representative gene: GCF_000451705#QS7_RS01850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 404 · GCF_000451705
AssemblyASM45170v1 · Contighaploid
Genome composition4 184 936 bp · 28,5% GCClostridioides difficile P19
Signal transduction countsGenes 103 · HK 48 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key