1 HisKA#1
120-183 aa · 64 aa · 18.6% of protein
Raw token
HisKA:120:0.000000000000311:183:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QS7_RS0118675
Histidine kinase, Classic
Clostridioides difficile P19 · GCF_000451705
ClassHKTypeClassicLength345 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451705#QS7_RS0118675Stable P2CS identifier used across views.
GenomeGCF_000451705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length345 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 345 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
233-329 aa · 97 aa · 28.1% of protein
Raw token
HATPase_c:233:7.38e-21:329:97:109- Raw architecture: HisKA:120:0.000000000000311:183:64:64#HATPase_c:233:7.38e-21:329:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451705::NZ_AVLW01000031.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61306-63139Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQS7_1645RefSeq proteinWP_234704426.1
Context group ID
GCF_000451705::NZ_AVLW01000031.1::G00022Context members
QS7_RS10590QS7_RS0118675
Partner locus tags
QS7_RS10590QS7_RS0118675
Partner old locus tags
QS7_1644QS7_1645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234704426.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQS7_RS0118675Primary locus identifier stored in the genes table.
Old locus tagQS7_1645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLW01000031.1Sequence record reported by the local genomic context database.
Genomic interval62 102-63 139 nt1 038 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 306-63 139 ntGCF_000451705::NZ_AVLW01000031.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451705::NZ_AVLW01000031.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLW01000031.1All displayed genes belong to this local TCS context.
Neighborhood span61 306-63 139 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 306 nt63 139 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QS7_RS10590GCF_000451705#QS7_RS10590
RROmpR
61 306-62 007 nt · Forward (+)
QS7_RS0118675GCF_000451705#QS7_RS0118675
HKClassicCurrent focus
62 102-63 139 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450945#QQM_RS09060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2819223
Simplified PFAM architecture for HKOC_2819223
PFAM domain coverage: 161 / 345 aa (46.7%)
1 aa345 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-183] | HATPase_c[233-330]
- Domain count: 2
- Matched identifier: HKOC_2819223
- Positioned domains: HisKA 121-183 ; HATPase_c 233-330
Cluster members and taxonomy
Representative gene: GCF_000450945#QQM_RS09060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 404 · GCF_000451705
AssemblyASM45170v1 · Contighaploid
Genome composition4 184 936 bp · 28,5% GCClostridioides difficile P19
Signal transduction countsGenes 103 · HK 48 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key