1 HisKA#1
94-156 aa · 63 aa · 20.3% of protein
Raw token
HisKA:94:0.000000107:156:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QS3_RS04325
Histidine kinase, Classic
Clostridioides difficile P13 · GCF_000451665
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451665#QS3_RS04325Stable P2CS identifier used across views.
GenomeGCF_000451665Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 311 aa (54.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
204-310 aa · 107 aa · 34.4% of protein
Raw token
HATPase_c:204:4.89e-31:310:107:109- Raw architecture: HisKA:94:0.000000107:156:63:64#HATPase_c:204:4.89e-31:310:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451665::NZ_AVLU01000019.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63040-64664Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQS3_0867RefSeq proteinWP_021404140.1
Context group ID
GCF_000451665::NZ_AVLU01000019.1::G00014Context members
QS3_RS04320QS3_RS04325
Partner locus tags
QS3_RS04320QS3_RS04325
Partner old locus tags
QS3_0866QS3_0867
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021404140.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN5VLG1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN5VLG1_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQS3_RS04325Primary locus identifier stored in the genes table.
Old locus tagQS3_0867Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLU01000019.1Sequence record reported by the local genomic context database.
Genomic interval63 729-64 664 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 040-64 664 ntGCF_000451665::NZ_AVLU01000019.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451665::NZ_AVLU01000019.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLU01000019.1All displayed genes belong to this local TCS context.
Neighborhood span63 040-64 664 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 040 nt64 664 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QS3_RS04320GCF_000451665#QS3_RS04320
RROmpR
63 040-63 732 nt · Forward (+)
QS3_RS04325GCF_000451665#QS3_RS04325
HKClassicCurrent focus
63 729-64 664 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0206265Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876392
Simplified PFAM architecture for HKOC_2876392
PFAM domain coverage: 170 / 311 aa (54.7%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-155] | HATPase_c[204-310]
- Domain count: 2
- Matched identifier: HKOC_2876392
- Positioned domains: HisKA 93-155 ; HATPase_c 204-310
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0206265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 402 · GCF_000451665
AssemblyASM45166v2 · Contighaploid
Genome composition4 021 448 bp · 28,5% GCClostridioides difficile P13
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key