1 Response_reg#1
6-112 aa · 107 aa · 45.3% of protein
Raw token
Response_reg:6:5.98e-19:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQY_RS16410
Response regulator LytTR family
Clostridioides difficile P9 · GCF_000451625
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451625#QQY_RS16410Stable P2CS identifier used across views.
GenomeGCF_000451625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:1.18e-18:227:93:98- Raw architecture: Response_reg:6:5.98e-19:112:110:111#LytTR:141:1.18e-18:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451625::NZ_AVLS01000136.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span47720-48430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQY_3350RefSeq proteinWP_009893949.1
Context group ID
GCF_000451625::NZ_AVLS01000136.1::G00054Context members
QQY_RS16410
Partner locus tags
QQY_RS16410
Partner old locus tags
QQY_3350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893949.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R1G7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R1G7_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQY_RS16410Primary locus identifier stored in the genes table.
Old locus tagQQY_3350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLS01000136.1Sequence record reported by the local genomic context database.
Genomic interval47 720-48 430 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 720-48 430 ntGCF_000451625::NZ_AVLS01000136.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451625::NZ_AVLS01000136.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLS01000136.1All displayed genes belong to this local TCS context.
Neighborhood span47 720-48 430 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 720 nt48 430 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQY_RS16410GCF_000451625#QQY_RS16410
RRLytTRCurrent focus
47 720-48 430 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988174
Simplified PFAM architecture for RROC_0988174
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0988174
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216850
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 435 total members. Page 1 / 9.
GCF_000003215#QAC_RS0216850 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 400 · GCF_000451625
AssemblyASM45162v2 · Contighaploid
Genome composition4 041 677 bp · 28,0% GCClostridioides difficile P9
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key