1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:7.07e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQU_RS07865
Response regulator OmpR family
Clostridioides difficile P7 · GCF_000451605
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451605#QQU_RS07865Stable P2CS identifier used across views.
GenomeGCF_000451605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:1.77e-34:229:75:77- Raw architecture: Response_reg:5:7.07e-35:114:111:111#Trans_reg_C:155:1.77e-34:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451605::NZ_AVLQ01000102.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10435-12268Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQU_1584RefSeq proteinWP_021417208.1
Context group ID
GCF_000451605::NZ_AVLQ01000102.1::G00023Context members
QQU_RS07865QQU_RS07870
Partner locus tags
QQU_RS07865QQU_RS07870
Partner old locus tags
QQU_1584QQU_1585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021417208.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQU_RS07865Primary locus identifier stored in the genes table.
Old locus tagQQU_1584Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLQ01000102.1Sequence record reported by the local genomic context database.
Genomic interval10 435-11 136 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 435-12 268 ntGCF_000451605::NZ_AVLQ01000102.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451605::NZ_AVLQ01000102.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLQ01000102.1All displayed genes belong to this local TCS context.
Neighborhood span10 435-12 268 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 435 nt12 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQU_RS07865GCF_000451605#QQU_RS07865
RROmpRCurrent focus
10 435-11 136 nt · Forward (+)
QQU_RS07870GCF_000451605#QQU_RS07870
HKClassic
11 186-12 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451605#QQU_RS07865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082720
Simplified PFAM architecture for RROC_1082720
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1082720
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000451605#QQU_RS07865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 398 · GCF_000451605
AssemblyASM45160v1 · Contighaploid
Genome composition4 049 588 bp · 28,5% GCClostridioides difficile P7
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key