1 Response_reg#1
5-113 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:5:3.29e-29:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQU_RS06890
Response regulator OmpR family
Clostridioides difficile P7 · GCF_000451605
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451605#QQU_RS06890Stable P2CS identifier used across views.
GenomeGCF_000451605Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-225 aa · 78 aa · 33.3% of protein
Raw token
Trans_reg_C:148:2.2e-30:225:78:77- Raw architecture: Response_reg:5:3.29e-29:113:110:111#Trans_reg_C:148:2.2e-30:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451605::NZ_AVLQ01000087.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9647-11582Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQU_1387RefSeq proteinWP_043898675.1
Context group ID
GCF_000451605::NZ_AVLQ01000087.1::G00019Context members
QQU_RS06890QQU_RS06895
Partner locus tags
QQU_RS06890QQU_RS06895
Partner old locus tags
QQU_1387QQU_1388
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_043898675.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQU_RS06890Primary locus identifier stored in the genes table.
Old locus tagQQU_1387Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLQ01000087.1Sequence record reported by the local genomic context database.
Genomic interval9 647-10 351 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 647-11 582 ntGCF_000451605::NZ_AVLQ01000087.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451605::NZ_AVLQ01000087.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLQ01000087.1All displayed genes belong to this local TCS context.
Neighborhood span9 647-11 582 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 647 nt11 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQU_RS06890GCF_000451605#QQU_RS06890
RROmpRCurrent focus
9 647-10 351 nt · Forward (+)
QQU_RS06895GCF_000451605#QQU_RS06895
HKClassic
10 329-11 582 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451605#QQU_RS06890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049070
Simplified PFAM architecture for RROC_1049070
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1049070
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 149-224 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_000451605#QQU_RS06890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 398 · GCF_000451605
AssemblyASM45160v1 · Contighaploid
Genome composition4 049 588 bp · 28,5% GCClostridioides difficile P7
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key